12870_2019_2047_MOESM9_ESM.xlsx (59.12 kB)
MOESM9 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production
dataset
posted on 2019-10-23, 08:24 authored by Julia Rubio, Evelyn Sánchez, David Tricon, Christian Montes, Jean-Philippe Eyquard, Aurélie Chague, Carlos Aguirre, Humberto Prieto, Véronique DecroocqAdditional file 9: Table S3. Differentially expressed miRNA species and their targets in wild-type ‘Angeleno’ and in PpeIFiso4G11-silenced transgenic line. 1 Treatment refers to the non-infected (NI) to infected, with either PPV-M or PPV-D, status of the plants. 2 Genotype refers either to wild-type, non-transformed plum (‘Angeleno’ NT) or to AG7303–96 transgenic plants (named here ‘PpeIFiso4G11-silenced’). Total normalized reads were calculated dividing the number of total reads of a specific molecule by the total number of reads in the library. Expectation for target genes were obtained from the pSRNA software [51]. The NCBI link allows to retrieve the identity and true/putative function of each target protein. A) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ wild-type (non-transgenic) plants. B) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ PpeIFiso4G11-silenced plants. C) miRNA species uniquely expressed either in Prunus salicina ‘Angeleno’ wild-type or PpeIFiso4G11-silenced plants.