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Additional file 2: of Genomic changes associated with adaptation to arid environments in cactophilic Drosophila species

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posted on 2019-01-16, 05:00 authored by Rahul Rane, Stephen Pearce, Fang Li, Chris Coppin, Michele Schiffer, Jennifer Shirriffs, Carla Sgrò, Philippa C. Griffin, Goujie Zhang, Siu Lee, Ary Hoffmann, John Oakeshott
Figure S1. Overlap between the orthogroups generating inparalogues in the different species. Figure S2. Overlap between orthogroups belonging to genes under positive selection in each repleta group species. Figure S3. Scheme for heat stress and recovery assay. Table S1. Scaffold and contig length based statistics as well as results from BUSCO genome assessment using the dataset for the five assembled repleta group genomes and D. melanogaster. Table S2. Repeat content analysis for the six species analysed in this study, characterising transposable elements as well as tandem repeats. Table S3. Genome annotation statistics for the five assembled repleta group genomes and D. melanogaster. Table S4. Number of pairwise orthologues between D. melanogaster and the five repleta species, plus the previously published annotation of D. buzzatii. Table S5. Sets of functional terms describing hierarchical grouping of gene ontology terms and the number of genes in Drosophila melanogaster within each set. (DOCX 301 kb)

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