Additional file 1 of A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction

Standard deviation calculation on MBD pulldown scale factors. Table S1 giving the details of the per-chromosome sub-sampling process to calculate a sample-to-sample standard deviation on the MBD pulldown scale factors listed in Table 1. The per-chromosome read alignment counts, per number of well-separated CpGs, in each data set (Pulldown and Background Control) are shown at top, with the resulting calculation of Cn values on each chromosome, the chromosome-averaged C n ∗ $C_{n}^{*}$ values, the per-chromosome calculation of fluctuations around this average ( ( C n − C n ∗ ) 2 $(C_{n} - C_{n}^{*})^{2}$ ), and finally the standard deviation sss on each Cn. (XLSX 26 kb)