The name of the query motif.

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The alternate name of the query motif.

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A link to more information about the query motif.

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The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.

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The number of significant matches of the query motif to a motif in the target database.

[close ]

Links to the first 20 matches of the query motif to a motif in the target database.

[close ]

The database name.

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The number of motifs read from the motif database minus the number that had to be discarded due to conflicting IDs.

[close ]

The number of motifs that had a match with at least one of the query motifs.

[close ]

The summary gives information about the matched motif. Mouse over each row to show further help buttons for each specific title.

[close ]

The name of the matched motif.

[close ]

The alternative name of the matched motif.

[close ]

The database containing the matched motif.

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The probability that the match occurred by random chance according to the null model.

[close ]

The expected number of false positives in the matches up to this point.

[close ]

The minimum False Discovery Rate required to include the match.

[close ]

The number of letters that overlaped in the optimal alignment.

[close ]

The offset of the query motif to the matched motif in the optimal alignment.

[close ]

The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.

[close ]

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

[close ]

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

[close ]

Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.

[close ]

Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.

[close ]

Toggle adding pseudocounts for Small Sample Correction.

[close ]

Toggle a full reverse complement of the alignment.

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Specify the width of the generated logo.

[close ]

Specify the height of the generated logo.

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[close ]

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For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007. [full text]

Query Motifs  |  Target Databases  |  Matches  |  Program information

Query Motifs

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Name 

Alt. Name 

Preview 

Matches 

List 
1 MEME
AGAAAGAGGAAG
4 MA0528.1 (ZNF263),  MA0687.1 (SPIC),  MA0080.4 (SPI1),  MA1418.1 (IRF3)
2 MEME
CCTCCCCCTCCC
24 MA0528.1 (ZNF263),  MA0516.1 (SP2),  MA0039.3 (KLF4),  MA0753.1 (ZNF740),  MA0057.1 (MZF1(var.2)),  MA0599.1 (KLF5),  MA0079.3 (SP1),  MA0471.1 (E2F6),  MA0697.1 (ZIC3),  MA0073.1 (RREB1)
3 MEME
ACACACACACA
0
4 MEME
AAAACAAA
5 MA0442.2 (SOX10),  MA1125.1 (ZNF384),  MA0514.1 (Sox3),  MA1152.1 (SOX15),  MA0041.1 (Foxd3)
5 MEME
CCTGTAATCCCA
0
6 MEME
CAGCCCTG
0
7 MEME
CCTCAGCTCCC
0
8 MEME
CCAGCCTGGCCA
0
9 MEME
GCGGTGGCTCAC
24 MA1141.1 (FOS::JUND),  MA0099.3 (FOS::JUN),  MA0477.1 (FOSL1),  MA1142.1 (FOSL1::JUND),  MA1144.1 (FOSL2::JUND),  MA1135.1 (FOSB::JUNB),  MA1138.1 (FOSL2::JUNB),  MA1137.1 (FOSL1::JUNB),  MA0478.1 (FOSL2),  MA1132.1 (JUN::JUNB)
10 MEME
GCCGCTGCCGCC
13 MA0499.1 (Myod1),  MA1100.1 (ASCL1),  MA0500.1 (Myog),  MA0816.1 (Ascl2),  MA0062.2 (Gabpa),  MA0076.2 (ELK4),  MA0516.1 (SP2),  MA0146.2 (Zfx),  MA0521.1 (Tcf12),  MA0750.2 (ZBTB7A)

Target Databases

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Database 

Number of Motifs 

Motifs Matched 
JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt 579 61

Matches to Query Motif 1 (MEME)

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Summary 

Alignment 
Name 
 MA0528.1
Alt. Name 
 ZNF263
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 9.57854e-06
E-value 
 0.00554598
q-value 
 0.0110803
Overlap 
 12
Offset 
 8
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0687.1
Alt. Name 
 SPIC
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 3.51018e-05
E-value 
 0.0203239
q-value 
 0.0203026
Overlap 
 12
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0080.4
Alt. Name 
 SPI1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000152645
E-value 
 0.0883816
q-value 
 0.0588592
Overlap 
 12
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1418.1
Alt. Name 
 IRF3
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00136412
E-value 
 0.789825
q-value 
 0.394498
Overlap 
 12
Offset 
 0
Orientation 
 Normal
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Matches to Query Motif 2 (MEME)

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Summary 

Alignment 
Name 
 MA0528.1
Alt. Name 
 ZNF263
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 9.50242e-06
E-value 
 0.0055019
q-value 
 0.0109063
Overlap 
 12
Offset 
 7
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0516.1
Alt. Name 
 SP2
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 2.27797e-05
E-value 
 0.0131894
q-value 
 0.0130726
Overlap 
 12
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0039.3
Alt. Name 
 KLF4
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 6.95925e-05
E-value 
 0.0402941
q-value 
 0.0220606
Overlap 
 11
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0753.1
Alt. Name 
 ZNF740
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 7.68839e-05
E-value 
 0.0445158
q-value 
 0.0220606
Overlap 
 10
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0057.1
Alt. Name 
 MZF1(var.2)
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000291863
E-value 
 0.168989
q-value 
 0.0669964
Overlap 
 10
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0599.1
Alt. Name 
 KLF5
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000438689
E-value 
 0.254001
q-value 
 0.0839167
Overlap 
 9
Offset 
 -3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0079.3
Alt. Name 
 SP1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000727552
E-value 
 0.421253
q-value 
 0.119291
Overlap 
 9
Offset 
 -3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0471.1
Alt. Name 
 E2F6
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00103594
E-value 
 0.599807
q-value 
 0.148623
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0697.1
Alt. Name 
 ZIC3
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00134076
E-value 
 0.776298
q-value 
 0.162975
Overlap 
 12
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0073.1
Alt. Name 
 RREB1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00141996
E-value 
 0.822158
q-value 
 0.162975
Overlap 
 12
Offset 
 7
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1102.1
Alt. Name 
 CTCFL
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00168399
E-value 
 0.975032
q-value 
 0.175708
Overlap 
 12
Offset 
 1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0470.1
Alt. Name 
 E2F4
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00190622
E-value 
 1.1037
q-value 
 0.182321
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA1107.1
Alt. Name 
 KLF9
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00304538
E-value 
 1.76327
q-value 
 0.264148
Overlap 
 11
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0500.1
Alt. Name 
 Myog
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00322205
E-value 
 1.86557
q-value 
 0.264148
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0159.1
Alt. Name 
 RARA::RXRA
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.0038518
E-value 
 2.23019
q-value 
 0.29042
Overlap 
 12
Offset 
 3
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0696.1
Alt. Name 
 ZIC1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00404858
E-value 
 2.34413
q-value 
 0.29042
Overlap 
 12
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0751.1
Alt. Name 
 ZIC4
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00602744
E-value 
 3.48989
q-value 
 0.406937
Overlap 
 12
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0747.1
Alt. Name 
 SP8
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.0072811
E-value 
 4.21576
q-value 
 0.441289
Overlap 
 11
Offset 
 1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0746.1
Alt. Name 
 SP3
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00730523
E-value 
 4.22973
q-value 
 0.441289
Overlap 
 9
Offset 
 -3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0103.3
Alt. Name 
 ZEB1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.0087568
E-value 
 5.07019
q-value 
 0.463855
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1100.1
Alt. Name 
 ASCL1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00876629
E-value 
 5.07568
q-value 
 0.463855
Overlap 
 11
Offset 
 2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0521.1
Alt. Name 
 Tcf12
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00929539
E-value 
 5.38203
q-value 
 0.463855
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA1122.1
Alt. Name 
 TFDP1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00929539
E-value 
 5.38203
q-value 
 0.463855
Overlap 
 11
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0155.1
Alt. Name 
 INSM1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00972332
E-value 
 5.6298
q-value 
 0.464993
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Matches to Query Motif 3 (MEME)

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Matches to Query Motif 4 (MEME)

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Summary 

Alignment 
Name 
 MA0442.2
Alt. Name 
 SOX10
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000128494
E-value 
 0.0743979
q-value 
 0.109427
Overlap 
 8
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1125.1
Alt. Name 
 ZNF384
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000189027
E-value 
 0.109447
q-value 
 0.109427
Overlap 
 8
Offset 
 4
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0514.1
Alt. Name 
 Sox3
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000359737
E-value 
 0.208288
q-value 
 0.138833
Overlap 
 8
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA1152.1
Alt. Name 
 SOX15
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000566101
E-value 
 0.327772
q-value 
 0.163856
Overlap 
 8
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0041.1
Alt. Name 
 Foxd3
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00115962
E-value 
 0.671418
q-value 
 0.268518
Overlap 
 7
Offset 
 -1
Orientation 
 Reverse Complement
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Matches to Query Motif 5 (MEME)

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Matches to Query Motif 6 (MEME)

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Matches to Query Motif 7 (MEME)

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Matches to Query Motif 8 (MEME)

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Matches to Query Motif 9 (MEME)

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Summary 

Alignment 
Name 
 MA1141.1
Alt. Name 
 FOS::JUND
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00105567
E-value 
 0.611232
q-value 
 0.23382
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0099.3
Alt. Name 
 FOS::JUN
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00112724
E-value 
 0.652672
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0477.1
Alt. Name 
 FOSL1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00125089
E-value 
 0.724266
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1142.1
Alt. Name 
 FOSL1::JUND
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.0013111
E-value 
 0.759125
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1144.1
Alt. Name 
 FOSL2::JUND
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00137672
E-value 
 0.797121
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1135.1
Alt. Name 
 FOSB::JUNB
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00151498
E-value 
 0.877175
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1138.1
Alt. Name 
 FOSL2::JUNB
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00151498
E-value 
 0.877175
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1137.1
Alt. Name 
 FOSL1::JUNB
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00203903
E-value 
 1.1806
q-value 
 0.23382
Overlap 
 11
Offset 
 -1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0478.1
Alt. Name 
 FOSL2
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00214142
E-value 
 1.23988
q-value 
 0.23382
Overlap 
 11
Offset 
 -1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1132.1
Alt. Name 
 JUN::JUNB
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00217727
E-value 
 1.26064
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0491.1
Alt. Name 
 JUND
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00224684
E-value 
 1.30092
q-value 
 0.23382
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1134.1
Alt. Name 
 FOS::JUNB
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00286576
E-value 
 1.65927
q-value 
 0.273375
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA1130.1
Alt. Name 
 FOSL2::JUN
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00342745
E-value 
 1.98449
q-value 
 0.283068
Overlap 
 10
Offset 
 -2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA1128.1
Alt. Name 
 FOSL1::JUN
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00371806
E-value 
 2.15276
q-value 
 0.283068
Overlap 
 11
Offset 
 -1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0066.1
Alt. Name 
 PPARG
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00390159
E-value 
 2.25902
q-value 
 0.283068
Overlap 
 12
Offset 
 7
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0476.1
Alt. Name 
 FOS
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00419962
E-value 
 2.43158
q-value 
 0.283068
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0696.1
Alt. Name 
 ZIC1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00461656
E-value 
 2.67299
q-value 
 0.283068
Overlap 
 10
Offset 
 4
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0490.1
Alt. Name 
 JUNB
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00475487
E-value 
 2.75307
q-value 
 0.283068
Overlap 
 11
Offset 
 -1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0489.1
Alt. Name 
 JUN(var.2)
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00481508
E-value 
 2.78793
q-value 
 0.283068
Overlap 
 12
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0736.1
Alt. Name 
 GLIS2
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00502225
E-value 
 2.90788
q-value 
 0.283068
Overlap 
 10
Offset 
 4
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0591.1
Alt. Name 
 Bach1::Mafk
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00544017
E-value 
 3.14986
q-value 
 0.283068
Overlap 
 12
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0697.1
Alt. Name 
 ZIC3
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00544017
E-value 
 3.14986
q-value 
 0.283068
Overlap 
 10
Offset 
 5
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0751.1
Alt. Name 
 ZIC4
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00697748
E-value 
 4.03996
q-value 
 0.347273
Overlap 
 10
Offset 
 5
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0655.1
Alt. Name 
 JDP2
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00796998
E-value 
 4.61462
q-value 
 0.380143
Overlap 
 9
Offset 
 -3
Orientation 
 Normal
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Matches to Query Motif 10 (MEME)

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Summary 

Alignment 
Name 
 MA0499.1
Alt. Name 
 Myod1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000123299
E-value 
 0.07139
q-value 
 0.0637904
Overlap 
 12
Offset 
 1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1100.1
Alt. Name 
 ASCL1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000123299
E-value 
 0.07139
q-value 
 0.0637904
Overlap 
 12
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0500.1
Alt. Name 
 Myog
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000655978
E-value 
 0.379811
q-value 
 0.188223
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0816.1
Alt. Name 
 Ascl2
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.000832956
E-value 
 0.482281
q-value 
 0.191203
Overlap 
 9
Offset 
 1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0062.2
Alt. Name 
 Gabpa
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.0012351
E-value 
 0.715123
q-value 
 0.236262
Overlap 
 11
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0076.2
Alt. Name 
 ELK4
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.0022353
E-value 
 1.29424
q-value 
 0.276781
Overlap 
 11
Offset 
 -1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0516.1
Alt. Name 
 SP2
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00258356
E-value 
 1.49588
q-value 
 0.276781
Overlap 
 12
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0146.2
Alt. Name 
 Zfx
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00263581
E-value 
 1.52614
q-value 
 0.276781
Overlap 
 12
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0521.1
Alt. Name 
 Tcf12
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00271688
E-value 
 1.57307
q-value 
 0.276781
Overlap 
 11
Offset 
 -1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0750.2
Alt. Name 
 ZBTB7A
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00301021
E-value 
 1.74291
q-value 
 0.276781
Overlap 
 12
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0048.2
Alt. Name 
 NHLH1
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00313499
E-value 
 1.81516
q-value 
 0.276781
Overlap 
 9
Offset 
 1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA1102.1
Alt. Name 
 CTCFL
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00482607
E-value 
 2.79429
q-value 
 0.346192
Overlap 
 9
Offset 
 -3
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0003.3
Alt. Name 
 TFAP2A
Database 
 JASPAR2018_CORE_vertebrates_non-redundant_pfms_meme.txt
p-value 
 0.00756306
E-value 
 4.37901
q-value 
 0.456864
Overlap 
 10
Offset 
 -2
Orientation 
 Normal
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TOMTOM version
4.10.2 (Release date: Thu Sep 03 15:00:54 2015 -0700)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.250   C: 0.250   G: 0.250   T: 0.250

Result calculation took 7.704 seconds
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