instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
Posted on 2020-06-19 - 03:35
Abstract Hi-C exploits contact frequencies between pairs of loci to bridge and order contigs during genome assembly, resulting in chromosome-level assemblies. Because few robust programs are available for this type of data, we developed instaGRAAL, a complete overhaul of the GRAAL program, which has adapted the latter to allow efficient assembly of large genomes. instaGRAAL features a number of improvements over GRAAL, including a modular correction approach that optionally integrates independent data. We validate the program using data for two brown algae, and human, to generate near-complete assemblies with minimal human intervention.
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Baudry, Lyam; Guiglielmoni, Nadège; Marie-Nelly, Hervé; Cormier, Alexandre; Marbouty, Martial; Avia, Komlan; et al. (2020). instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.5028611.v1