scripts.zip (3.88 kB)

Home-made scripts used in the bioinformatics pipeline

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posted on 22.06.2017, 13:55 by Gaël Even, Léa Siegwald
Compressed file that contains the four home-made scripts used in the home-made bioinformatics pipeline: fasta_dealigner.py: Python script used in the first step of the home-made bioinformatics pipeline, that generates an unaligned FASTA file. rarefaction.R: R script (v2.14.1) used in the second step of the home-made bioinformatics pipeline, that generates intra-sample rarefaction curves. OTU_tables_format.pl: Perl script that generates OTU count tables at the end of the second step of the home-made bioinformatics pipeline. OTU_tables_merge.py: Python script that merges OTU count tables from all samples produced at the end of the second step of the home-made bioinformatics pipeline in order to produce a global OTU Table tsv file.

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