MOESM1 of Complete genome sequence of Lactobacillus pentosus SLC13, isolated from mustard pickles, a potential probiotic strain with antimicrobial activity against foodborne pathogenic microorganisms
journal contributionposted on 18.01.2018, 05:00 by Min-Lang Huang, Jing-Yao Huang, Cheng-Yen Kao, Tony Fang
Additional file 1: Figure S1. Genetic organization of eps gene cluster of L. pentosus SLC13 and L. plantarum WCFS1. The graphic is centered on the focus gene (tyrosine-protein kinase transmembrane modulator, epsC), which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four chromosome loci are functionally coupled and share gray background boxes. Gene number 2, UDP-glucose 4-epimerase; number 3, tyrosine-protein kinase epsD; number 4, manganese-dependent protein-tyrosine phosphatase; number 5, undecaprenyl-phosphate galactosephosphotransferas; number 6, excinuclease ABC subunit C; number 7, exopolysaccharide biosynthesis glycosyltransferase epsF; number 8, integrase/recombinase (putative); number 9, glutamine ABC transporter, ATP-binding protein; number 10, dTDP-4-dehydrorhamnose reductase. Figure S2. Genetic organization of genes for bacteriocins synthesis. (A). Genetic organization of pln gene cluster of L. pentosus SLC13 and L. plantarum WCFS1. The graphic is centered on the focus gene (plnP), which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Gene number 2, Three-component quorum-sensing regulatory system, sensor histidine kinase; number 3, Three-component quorum-sensing regulatory system, response regulator; number 4, plnL; number 5, Na(+)/H(+) antiporter; number 6, Branched-chain amino acid transport system carrier protein. (B). Genetic organization of putativeÂ class II bacteriocin on SLC13 chromosome predicted by BAGEL3 server. The gene for putative bacteriocin is shown in green.