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Additional file 9 of CGGBP1-regulated cytosine methylation at CTCF-binding motifs resists stochasticity

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posted on 2020-07-30, 06:18 authored by Manthan Patel, Divyesh Patel, Subhamoy Datta, Umashankar Singh
Additional file 9. Methylation differences between CT and KD are discernible at small genomic length ranges: Genome-wide methylation signal distribution was compared between CT and KD by using “deeptools multiBigwigSummary”. Methylation signals were compared at bin sizes of 10 kb, 5 kb, 1 kb and 0.2 kb. Correlation between CT and KD was computed by the Spearman method by using “deeptools plotCorrelation” for GM02639 cells. These correlation coefficients can be compared with those for HEK293T (Additional file 7).

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Science and Engineering Research Board Gujarat State Biotechnology Mission Department of Biotechnology , Ministry of Science and Technology Biomedical Engineering Centre IIT Gandhinagar DST-ICPS

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    BMC Genetics

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    CGGBP1CTCFTranscription factor binding sitesCytosine methylationAllelic imbalanceStochasticity

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