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Additional file 4 of Data-driven and interpretable machine-learning modeling to explore the fine-scale environmental determinants of malaria vectors biting rates in rural Burkina Faso

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posted on 2021-06-30, 03:30 authored by Paul Taconet, Angélique Porciani, Dieudonné Diloma Soma, Karine Mouline, Frédéric Simard, Alphonsine Amanan Koffi, Cedric Pennetier, Roch Kounbobr Dabiré, Morgan Mangeas, Nicolas Moiroux
Additional file 4: Figure S4. Model evaluation plots for the presence models. A1, A2, A3 are precision–recall curves for the presence models of respectively An. funestus, An. gambiae s.s. and An. coluzzii. Precision–recall curves show the precision and the recall of the models for different probability thresholds of the “presence” class. Precision is the proportion of presence identifications that was actually correct, while recall is the proportion of actual presence observations that were identified correctly. The horizontal dashed line represents the baseline (i.e. random or no-skill) classifier. A precision–recall curve above the horizontal line indicates a better-than-no-skill classifier. The higher the area between the precision–recall curve and the horizontal line, the better the classifier. Plots B1, B2, B3 are observed vs. predicted presence probabilities for each out-of-sample village. The y-axis represents the sum over the 8 sampling points/village/survey (4 points by village * 2 places (interior and exterior)). Overall, the plots A1, A2, A3 show that the models had good predictive accuracies (precision–recall curves are higher than the baseline curve, particularly for An. funestus and An. coluzzii). The plots B1, B2, B3 show that the models predicted well the spatiotemporal trends of presence/absence of bites (lines of predicted presence probabilities are generally close to lines of observed probabilities), although they usually slightly overestimated the probabilities of being bitten (predicted presence probability > observed presence probability).

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Expertise France Agence Nationale de la Recherche

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