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Additional file 2 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean

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posted on 2023-08-19, 03:21 authored by Pavla Debeljak, Barbara Bayer, Ying Sun, Gerhard J. Herndl, Ingrid Obernosterer
Additional file 2: Supplementary Figure 2. Bioinformatic pipeline for the analysis of all three ‘omics’ levels. A. Metagenomic assembly (individual and Co-Assembly) and binning B. Construction of Ocean protein database from metagenomic assemblies C. Metatranscriptomic mapping to metagenomes after extraction of mRNA with SortMeRNA D. Metaproteomic analysis with metagenomic database and annotation in eggNOG and KEGG.

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Agence Nationale de la Recherche Austrian Science Fund Fondation BNP Paribas CNRS LEFE/CYBER

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    Microbiome

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    Keywords

    Prokaryotic membrane transportersOrganic substrate utilizationIron uptakeMetatranscriptomicsMetaproteomicsMetagenome-assembled genomesSouthern OceanOcean microbiome

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