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Download fileAdditional file 1 of Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora
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posted on 2023-03-02, 15:58 authored by Zhe-Ran Wu, Jian-Ting Fan, Na Tong, Jin-Meng Guo, Yang Li, Min Lu, Xiao-Long LiuAdditional file 1: Table S1. The classification and number among different species used in OBPs, CSPs and GRs in the phylogenetic trees. OBPs and CSPs in non-coleoptera species were not used in the phylogenetic analyses. The number of GR in non-coleoptera species of annotated proteins in those genomes were marked in green, in the transcriptome data was marked in bule. The italic numbers were used to structure the GR tree. Table S2. Primers for qRT-PCR of chemosensory genes in P. versicolora. Table S3. The Blastx match of P. versicolora candidate CSP and OBP genes. The new genes compared to previous reports were marked with bule color. Table S4. The Blastx match of P. versicolora candidate GR, IR, OR and SNMP genes. The new genes compared to previous reports were marked with bule color. Fig. S1. Distribution of unigene size of transcriptome assembly from third instar larvae head in P. versicolora. Fig. S2. Gene ontology (GO) classification of transcriptome unigenes from third instar larvae head in P. versicolora. Figure S3. Phylogenetic analysis of the IRs. The P. versicolora genes are shown in blue. The values at the branch nodes represent bootstrap values based on 1000 replicates. Figure S4. The Venn diagrams of chemosensory genes in P. versicolora from the transcriptome of antennae, forelegs and larvae. Figure S5. Phylogenetic analysis of the ORs. The P. versicolora genes are shown in blue. Pver, P. versicolora; Harm, Helicoverpa armigera; Cbow, Colaphellus bowringi. The values at the branch nodes represent bootstrap values based on 1000 replicates. File S1. The amino acid sequences of Plagiodera versicolora putative chemosensory genes.
History
References
- 10.1046/j.1570-7458.1998.00328.x
- 10.1046/j.1365-2583.2000.00221.x
- 10.1007/s10886-008-9434-2
- 10.1146/annurev.neuro.30.051606.094306
- 10.1038/293161a0
- 10.1111/j.1365-2583.2008.00836.x
- 10.1016/j.cell.2008.12.001
- 10.1371/journal.pone.0154706
- 10.1016/j.pestbp.2019.04.011
- 10.1016/j.ibmb.2020.103313
- 10.1016/j.cub.2020.08.047
- 10.1038/hdy.2009.55
- 10.1111/j.1365-2583.2010.01057.x
- 10.1146/annurev-ento-120811-153635
- 10.3389/fphys.2014.00320
- 10.1073/pnas.0803309105
- 10.1007/s00441-020-03336-0
- 10.1016/0896-6273(94)90150-3
- 10.1006/bbrc.1999.1791
- 10.1016/S0014-5793(99)01683-X
- 10.1016/S0083-6729(10)83010-9
- 10.1042/BJ20110522
- 10.1016/j.ibmb.2011.10.005
- 10.1111/j.1365-2583.2011.01125.x
- 10.1016/S0965-1748(96)00055-0
- 10.1046/j.1432-1327.1999.00438.x
- 10.1007/s00018-005-5607-0
- 10.1186/s12864-018-4898-0
- 10.3389/fphys.2020.00889
- 10.3390/insects12030209
- 10.1016/j.cbd.2021.100876
- 10.1016/j.ygeno.2022.110310
- 10.1038/nature06850
- 10.1371/journal.pone.0024111
- 10.1371/journal.pbio.0040020
- 10.1016/j.neuron.2011.11.003
- 10.1038/s41586-018-0420-8
- 10.1073/pnas.1019622108
- 10.1016/j.cell.2012.10.024
- 10.1111/j.1365-2583.2011.01120.x
- 10.1371/journal.pgen.1001064
- 10.1523/JNEUROSCI.2432-05.2005
- 10.1016/j.neuron.2010.11.042
- 10.1111/j.1461-0248.2009.01349.x
- 10.1186/s40168-021-01066-1
- 10.3390/insects13010036
- 10.3390/insects13090763
- 10.1007/BF00192566
- 10.1038/nbt.1883
- 10.1186/s12864-015-2236-3
- 10.1016/j.cbd.2014.05.001
- 10.1038/s41598-019-52149-x
- 10.1016/j.pestbp.2019.12.002
- 10.1007/s10886-012-0221-8
- 10.1016/j.ibmb.2015.03.002
- 10.1016/j.ibmb.2016.04.010
- 10.1038/nature05466
- 10.1073/pnas.0702421104
- 10.1016/j.cub.2008.10.009
- 10.1016/j.cub.2007.07.062
- 10.1016/j.ibmb.2020.103470
- 10.1093/bioinformatics/btm404
- 10.1093/molbev/mst197
- 10.1006/meth.2001.1262
- 10.1111/1749-4877.12528
- 10.3390/agronomy12051192
- 10.1111/jen.12136
- 10.3389/fphys.2020.00317
- 10.1017/S0007485318000123
- 10.1007/s00114-015-1260-0
- 10.1016/j.ibmb.2017.03.007
- 10.1016/j.cub.2016.10.013
- 10.1016/j.cbpb.2018.10.001
- 10.1093/chemse/26.7.833
- 10.1016/j.ibmb.2016.03.005
- 10.1016/j.ibmb.2022.103719
- 10.1016/S2095-3119(14)60849-2
- 10.1016/j.cbd.2020.100724
- 10.1017/S0007485317000402
- 10.1002/arch.21452
- 10.1186/s12864-018-5315-4
- 10.1016/j.ibmb.2006.09.009
- 10.1007/s00427-006-0127-y