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Additional file 1 of The variant call format provides efficient and robust storage of GWAS summary statistics

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posted on 2021-01-14, 04:39 authored by Matthew S. Lyon, Shea J. Andrews, Ben Elsworth, Tom R. Gaunt, Gibran Hemani, Edoardo Marcora
Additional file 1: Figure S1. VCF format adapted to store GWAS summary statistics (GWAS-VCF). Example GWAS-VCF with individual sections labelled. Table S1. Data fields in the GWAS-VCF. Required and optional GWAS-VCF fields with descriptions as defined in the file specification. Table S2. Open-source tools for working with GWAS-VCF. Description of open-source software for working with GWAS-VCF and download links. Table S3. Possible variant identifier schemes for the ID column of GWAS-VCF. Example unique variant identifier schemes and their advantages/disadvantages.

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National Institute for Health Research Medical Research Council Wellcome Trust JPB Foundation

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    GWASVCFSummary statisticsStorage format

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