Additional file 1: of The genome of the giant Nomura’s jellyfish sheds light on the early evolution of active predation
journal contribution
posted on 2019-03-29, 05:00 authored by Hak-Min Kim, Jessica Weber, Nayoung Lee, Seung Park, Yun Cho, Youngjune Bhak, Nayun Lee, Yeonsu Jeon, Sungwon Jeon, Victor Luria, Amir Karger, Marc Kirschner, Ye Jo, Seonock Woo, Kyoungsoon Shin, Oksung Chung, Jae-Chun Ryu, Hyung-Soon Yim, Jung-Hyun Lee, Jeremy Edwards, Andrea Manica, Jong Bhak, Seungshic YumAdditional Methods, Figures S1–S25, Tables S1–S20, S23, S24, S29, S38-S53. Figure S1. Species identification. Figure S2, Table S1. Estimating genome size and complexity. Figures S3–S5, Tables S2–S9. Sequencing and assembly. Figure S6. GC content distributions. Tables S10–S13. Gene and repeat annotations. Figure S7. Phylogenetic tree with divergence times. Tables S14–S20. Functional enrichment of gene family expansion and contraction. Figure S8. Domain expansion. Figure S9, Table S23. Fast-evolving gene. Figure S10. Gene age estimation. Figures S11 and S12, Table S24. Analyses of Otx and POU genes. Figure S13. Genomic context. Table S29. Transcriptome sequencing. Figures S14–S17, Tables S38–S40. Myosin type II gene analyses. Table S41. Homeobox domain. Figures S18–S21. Hox gene analyses. Figures S22 and S23, Table S42. Wnt gene analyses. Tables S43–S45. Transcriptome assembly. Tables S46–S49. Functional enrichment of development stages. Figures S24 and S25, Tables S50–S52. RXR and RAREs analyses. Table S53. Venom domain analysis. (DOCX 4760 kb)
