Additional file 1 of Genome-wide characterization and expression of Oryza sativa AP2 transcription factor genes associated with the metabolism of mesotrione

Additional file 1: Table S1. Primers for genes used for validating gene expression in rice tissues. Table S2. The expression abundance of genes coding for AP2s from roots and shoots of rice (Oryza sativa) in the presence of mesotrione (+ MTR) and absence of mesotrione (-MTR). The log2fold change > 0, log2fold change < 0 and –- means expression of the genes was stimulated and not changed comparing with controls, respectively. Table S3. The expression abundance of genes coding for AP2s from roots and shoots of rice (Oryza sativa) in the presence of mesotrione (+ MTR) and absence of mesotrione (-MTR). The "Up" means expression of the genes that changed more than twofold compared with controls, respectively, with false-discovery rates < 0.001. Table S4. Collinearity analysis results of rice AP2 genes (intraspecific). Table S5. Collinearity analysis results of rice AP2 genes (interspecific). Table S6. List of the AP2 genes identified in this study. Table S7. Mapping of rice AP2 genes to those of Arabidopsis/Glycine max. Table S8. Prediction of domain of AP2s. Table S9. Prediction of cis-regulatory elements in promoter regions of AP2s. Table S10. Prediction biophysical properties of AP2 DEGs induced by MTR. Table S11. Prediction of three-dimensional (3D) model of AP2 proteins. Table S12. Analysis of protein–protein interactions among rice AP2 family genes. Table S13. Prediction of crystal structures of AP2 proteins. Table S14. Molecular docking analysis of AP2 proteins and MTR. Fig. S1. Chromosomal location of AP2 genes from rice response to MTR. The scale on the left is in megabases (Mb). The different colors in chromosomes represent gene density. Fig. S2. Predicted 3D models of rice AP2 proteins. Fig. S3. The relative expression levels of 9 AP2 genes in response to MTR stress treatment.