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Additional file 1 of Comprehensive transcriptomic and proteomic analyses of antroquinonol biosynthetic genes and enzymes in Antrodia camphorata

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posted on 2020-08-04, 04:22 authored by Xiaofeng Liu, Yongjun Xia, Yao Zhang, Caiyun Yang, Zhiqiang Xiong, Xin Song, Lianzhong Ai
Additional file 1: Table S1. Primers used for q-PCR. Table S2. Summary of DEGs in KEGG pathway annotation (10-day samples). Table S3. GO annotation of upregulated proteins (10-day samples). Table S4. Other upregulated proteins on day 10 based on proteomic analysis. Table S5. The number of genes and proteins at transcriptomic and proteomic levels (10-day samples). Table S6. The mRNA expression levels of genes on days 4 and 5. Figure S1. Venn diagram of expressed genes in A. camphorata S-29 transcriptomes in KB and FM on days 4, 5, and 10, respectively. Figure S2. Functional categorization by KEGG of A. camphorata S-29 transcriptome. Figure S3. Analysis of DEGs between KB and FM by KEGG enrichment map. A. KB4 VS FM4; B. KB5 VS FM5. Figure S4. A summary of protein information of A. camphorata S-29. Figure S5. The GO annotation of 3987 proteins in A. camphorata S-29. Figure S6. Volcano plot of the 3987 proteins during FM compared with KB. Figure S7. The concentrations of CoQ0 and AQ. The experiments were carried out with three replications. Values are given as the means ± standard deviations (n = 3). Figure S8. Genes annotations in the AQ synthesis pathway during FM. FPP, farnesyl diphosphate; OA, orsellinic acid; FOA, 3-farnesyl-orsellinic acid; 5-DMQ3, 5-demethoxy- coenzyme Q3; CoQ3, coenzyme Q3; AQ, antroquinonol.

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National Natural Science Foundation of China Shanghai Engineering Research Center of Food Microbiology

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