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Additional file 1 of A meta-analysis of genetic and phenotypic diversity of European local pig breeds reveals genomic regions associated with breed differentiation for production traits

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posted on 2023-12-08, 04:42 authored by Klavdija Poklukar, Camille Mestre, Martin Škrlep, Marjeta Čandek-Potokar, Cristina Ovilo, Luca Fontanesi, Juliette Riquet, Samuele Bovo, Giuseppina Schiavo, Anisa Ribani, Maria Muñoz, Maurizio Gallo, Ricardo Bozzi, Rui Charneca, Raquel Quintanilla, Goran Kušec, Marie-José Mercat, Christoph Zimmer, Violeta Razmaite, Jose P. Araujo, Čedomir Radović, Radomir Savić, Danijel Karolyi, Bertrand Servin
Additional file 1: Table S1. Summary of sequencing statistics (adapted from Bovo et al.[8]). The table represents the pooled whole-genome sequencing statistics. Table S2. Description of phenotypic traits used for phenotypic characterization of European local pig breeds. Description of the phenotypic traits included in the principal component analysis.

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Horizon 2020 Framework Programme Javna Agencija za Raziskovalno Dejavnost RS

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    possible biological effectsitalian apulo calabresethree modern breedsportuguese alentejano breedsmodern pig breedslocal pig breedsbreeds clustered accordingtwo regions containingspecific environmental conditionsdifferent living environmentspool sequencing dataprincipal component analysismay underlie adaptationgenetic variation representedexample french gasconbetter growth potentialphenotypic data distinguishedreproductive performance traitsspecific environmentsphenotypic traitsleaner breedsfatter breedscasertana breedsbasque breedsregion containingphenotypic datareproductive performancereproductive efficiencyproduction traitsphenotypic diversitygenetic datastrong associationsrich genotypicresults analysisremained lowerproduction systemspomc geneslow growthlarge whitehsd17b7 genegeographical origingenetic improvementextensive systemsduroc ).dedicated approachbreed levelbreed differentiationantxr1 genesanalyzed using

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