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MOESM7 of A machine learning-based service for estimating quality of genomes using PATRIC

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posted on 2019-10-04, 04:44 authored by Bruce Parrello, Rory Butler, Philippe Chlenski, Robert Olson, Jamie Overbeek, Gordon D. Pusch, Veronika Vonstein, Ross Overbeek
Additional file 7 Pasolli et al. quality report. This is a report of EvalCon and EvalG scores for high- and medium-quality genomes assembled in the Pasolli et al. study. Columns, in order, are Pasolli et al. genome name, CheckM completeness score, CheckM contamination score, PATRIC genome ID, Scientific name of organism, EvalG completeness score, EvalG contamination score, EvalCon coarse consistency score, EvalCon fine consistency score, and “good?” Genomes marked “good” in this table will meet the following criteria: (1) contamination ≤10%, (2) fine consistency ≥87%, and (3) completeness ≥80%, and (4) a single copy of pheS of appropriate length.

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