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MOESM14 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

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posted on 2017-02-07, 05:00 authored by Paul Daly, Jolanda Munster, Martin Blythe, Roger Ibbett, Matt Kokolski, Sanyasi Gaddipati, Erika Lindquist, Vasanth Singan, Kerrie Barry, Anna Lipzen, Chew Ngan, Christopher Petzold, Leanne Chan, Steven Pullan, StĂŠphane Delmas, Paul Waldron, Igor Grigoriev, Gregory Tucker, Blake Simmons, David Archer
Additional file 14: Table S11. CAZy, transcription factor and sugar transporter content of MFuzz clusters from the HTS time-course. File with lists of genes from each cluster from the HTS time-course of all genes from the categories of CAZy, Pfam for sugar transporters and Pfam for transcription factors that met selection criteria. Only genes strongly associated with a cluster’s predominant expression profile (membership value > 0.5 as well as an FPKM > 10 at the cluster’s expression peak) were selected which led to the capture of between a half and a third of each category.

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