12711_2022_698_MOESM9_ESM.tsv (1 MB)
Additional file 9 of ddRAD-seq reveals the genetic structure and detects signals of selection in Italian brown trout
dataset
posted on 2022-02-01, 04:54 authored by Gabriele Magris, Fabio Marroni, Edo D’Agaro, Massimo Vischi, Cristina Chiabà, Davide Scaglione, James Kijas, Maria Messina, Emilio Tibaldi, Michele MorganteAdditional file 9: Table S5. Anchored linkage map of Salmo trutta. Linkage map of Salmo trutta, anchored on the Salmo salar genome as in the original study [38], and on the Salmo trutta genome as performed in the present study. The last six columns report the mean heterozygosity for the whole dataset and for each of the five lineages, respectively.
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university of udine
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water fish speciesinformed breeding programsendemic gene pooldense genotyping dataapparently high levelsseveral regions putativelyseveral regions associatedincreasing gene diversityconstitute candidate regionsidentified putative signaturesdetected putative signaturesendemic italian troutstocking ), confirmintroduced strong admixturecontrolling stocking practicesbrown trout populationsresults also showstocking practicesstocking populationsitalian populationsfarmed troutsnps ),show evidencegenetic diversitydetect signaturesstudied populationslocal populationswidespread freshtake actionseq revealsseq approachpopulation structurephylogenetic relationshipsinformation derivinginfectious diseasesheterozygosity acrosshelp genotypeheavily influencedgenetic structuregenes involvedfunctional categoriesevolutionary historydistinct lineagesdifferent waysdetects signalsatlantic lineage
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