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12864_2021_8266_MOESM7_ESM.csv (78.29 kB)

Additional file 7 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

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posted on 2022-03-17, 04:30 authored by Hao Zhang, Michael E. Rice, Joseph W. Alvin, Dominique Farrera-Gaffney, James J. Galligan, Michael D. L. Johnson, Darren A. Cusanovich
Additional file 7: Supplementary Table S7. Differential motif deviation analysis results generated using chromVAR in native samples. Files contain results for differential deviation score tests between clusters for all motifs. Column 1 is the human motif ID from JASPAR CORE database; Column 2 shows the cluster of interest for each differential test; Columns 3 and 4 indicate the p value and adjusted p value calculated by the differentialDeviations function in chromVAR; Column 5 shows the difference between the mean of bias corrected deviations in the cluster of interest and the mean of bias corrected deviations in all other clusters.