40168_2021_1134_MOESM6_ESM.xlsx (10.03 kB)

Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities

dataset

posted on 2021-09-01, 03:33 authored by Raminta Kazlauskaite, Bachar Cheaib, Chloe Heys, Umer Zeeshan Ijaz, Stephanie Connelly, William Sloan, Julie Russel, Laura Rubio, John Sweetman, Alex Kitts, Philip McGinnity, Philip Lyons, Martin Llewellyn

Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This table also shows the number of reads and the percentage of total reads (100%) within each of the subset datasets. Note: in the 60% subset three samples were lost as they did not retain any under that criteria OTUs: Id-val1-PC1, Id-Val2-MG4 and Id-Val2-PC1.

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Biotechnology and Biological Sciences Research Council Science Foundation Ireland, the Marine Institute, and the Department for the Economy, Northern Ireland Scottish Aquaculture Innovation Centre Natural Environment Research Council Lord Kelvin Adam Smith Leadership Fellowship Alltech

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SalmoSim Gut microbiota In vitro gut model system Atlantic salmon NGS

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CC BY + CC0

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