12864_2021_8266_MOESM6_ESM.csv (68.92 kB)
Download fileAdditional file 6 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei
dataset
posted on 2022-03-17, 04:30 authored by Hao Zhang, Michael E. Rice, Joseph W. Alvin, Dominique Farrera-Gaffney, James J. Galligan, Michael D. L. Johnson, Darren A. CusanovichAdditional file 6: Supplementary Table S6. The matrix of FRiP-TF score in fixed samples and the clusters assigned to each ChIP-seq dataset. Column 1 (“TF”) indicates the name and source, if provided, of transcription factors. Column 2 lists the cluster membership for each TF. Columns 3-50 show the sample ID for each ATAC condition as listed in Table S1.
History
References
- 10.1126/science.184.4139.868
- 10.1073/pnas.1312523111
- 10.1038/nature11232
- 10.1016/j.cell.2008.02.022
- 10.1038/nmeth.2688
- 10.1038/nmeth.2688
- 10.1016/j.stem.2017.10.012
- 10.1038/s41590-018-0176-1
- 10.1186/s12864-018-4559-3
- 10.1038/nmeth.4396
- 10.1186/s13059-016-0882-7
- 10.1126/science.aab1601
- 10.1126/science.aab1601
- 10.1038/s41467-018-07771-0
- 10.1038/nature14590
- 10.1038/s41587-019-0206-z
- 10.1534/g3.117.300257
- 10.1101/gr.177881.114
- 10.1038/nmeth.4031
- 10.1038/s41467-018-07115-y
- 10.1038/nature25981
- 10.1038/s41592-020-0775-2
- 10.1186/s13059-021-02349-4
- 10.1038/nature14248
- 10.1038/nmeth.4401
- 10.1038/srep08512
- 10.1016/j.cell.2019.01.022
- 10.1093/bioinformatics/btu170
- 10.1093/bioinformatics/btp352
- 10.1038/nmeth.1923
- 10.1093/bioinformatics/btq033
- 10.1093/nar/gku365
- 10.1186/s13059-014-0550-8
- 10.1111/j.2517-6161.1995.tb02031.x
- 10.1111/j.2517-6161.1995.tb02031.x
