Additional file 3 of Runs of homozygosity in the Italian goat breeds: impact of management practices in low-input systems
dataset
posted on 2021-12-12, 04:15 authored by Matteo Cortellari, Arianna Bionda, Alessio Negro, Stefano Frattini, Salvatore Mastrangelo, Elisa Somenzi, Emiliano Lasagna, Francesca M. Sarti, Elena Ciani, Roberta Ciampolini, Donata Marletta, Luigi Liotta, Paolo Ajmone Marsan, Fabio Pilla, Licia Colli, Andrea Talenti, Paola CrepaldiAdditional file 3: Table S1. List of the genes identified by the analyses of the signatures of selection: top 1% homozygosity score in CSD and NRD groups, ΔROH, and averaged FST. CSD = Central-southern population group; NRD = Northern population group.
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isolated valleys presentdifferent rural areasaccurate mating planningchromosome 12 relatedchromosome 11 relatedshorter roh segmentsroh analyses showedindividual roh numberdifferent roh lengthssmall population sizeprovides useful informationlower inbreeding coefficientinput agricultural systemsimpacted genome shapingitalian goat breedsidentified 17 genesdifferent management practicesroh length classesnrd populations bredseveral small breedssmall populations6 relatedgoat breedsgoat populationsmanagement practicesinput systemfarming systemsbody size23 genesroh distributionroh ),undergoing nonrecent standardizationoptimal managementnrd grouplikely duegenomic inbreedingenvironmental adaptationchromosomes 5averaged fstadmixture events902 goats
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