Additional file 2 of The role of Neanderthal introgression in liver cancer

Additional file 2: Table S1. Fisher’s exact test results for the European set. Table S2. Fisher’s exact test results for the East Asian set. Table S3. Somatic mutation ratio results for the European set. Table S4. Somatic mutation ratio results for the East Asian set. Table S5. Summarized Variant Effect Predictor results on Neanderthal and modern haplotypes for the European set. Table S6. Summarized Variant Effect Predictor results on Neanderthal and modern haplotypes for the East Asian set. Table S7. Allele specific expression of Neanderthal alleles for genes in Europeans. Median proportion of reads supporting the Neanderthal alleles in each gene with at least 5 samples. Each gene is also annotated with whether the gene shows enrichment of somatic mutations on Neanderthal haplotypes or was not significant. Table S8. Allele specific expression of Neanderthal alleles for genes in East Asians. Median proportion of reads supporting the Neanderthal alleles in each gene with at least 5 samples. Each gene is also annotated with whether the gene shows enrichment of somatic mutations on Neanderthal haplotypes or was not significant. Table S9. Wilcoxon Rank Sum test results for the genes with Neanderthal allele expression in both tumor and unaffected liver from European samples. Table S10. χ2 test results for the European set. Table S11. χ2 test results for the East Asian set. Table S12. Summary of genes mentioned in discussion.