Additional file 2 of Multi-omics profiling of chromatin accessibility and H3K27ac reveals super-enhancer–mediated regulatory networks governing endometrial receptivity in goats

Additional file 2: Table S1. Details of primer sequences used for RT-qPCR. Table S2. Overview of RNA-seq data. Table S3. Overview of ATAC-seq and CUT&Tag data. Table S4. List of DEGs. Table S5. The transcription factor prediction of DEGs. Table S6. K-means clustering analysis of DEGs. Table S7. KEGG enrichment of DEGs. Table S8. Gene annotation associated with Gain DARs. Table S9. Gene annotation associated with Loss DARs. Table S10. KEGG enrichment of promoter gain DARs. Table S11. KEGG enrichment of promoter loss DARs. Table S12. Gene annotation associated with Gain DPs. Table S13. Gene annotation associated with Loss DPs. Table S14. KEGG enrichment of gain DP target genes. Table S15. Motif enrichment results in gain and loss DARs. Table S16. ATAC-seq peaks located on the DEGs' promoter and gene body. Table S17. Integrated analysis of ATAC-seq and RNA-seq data. Table S18. KEGG enrichment of up- and down-DEGs in the gain accessible groups. Table S19. CON_ATAC-seq vs. ERE_ATAC-seq. Gain. DAR. Motif annotation. Table S20. HINT TF footprinting analysis. Table S21. Identification of enhancers. Table S22. Analysis of enhancers and sEnhs target genes across CON and ERE samples. Table S23. GO enrichment analysis of sEnh-targeted DEGs in the CON and ERE group. Table S24. KEGG enrichment of up- and down-DEGs in the DP groups. Table S25. H3K27ac peaks are located on the DEGs promoter and gene body. Table S26. Overlap of the known DEGs and the genes associated with the DPs. Table S27. KEGG analysis of overlap genes. Table S28. Overlap of the gain DP and enhancer target DEGs in the ERE and CON group. Table S29. Overlap peaks of DAR and DP. Table S30. Statistics of DEGs regulated by chromatin accessibility and H3K27ac. Table S31. GO enrichment analysis of DEGs regulated by chromatin accessibility and H3K27ac. Table S32. KEGG analysis of DEGs regulated by chromatin accessibility and H3K27ac. Table S33. Overlap DEGs of DARs, DPs, and the enhancers targeted.