Additional file 2 of Hybrid assembly of an agricultural slurry virome reveals a diverse and stable community with the potential to alter the metabolism and virulence of veterinary pathogens
posted on 2021-03-21, 04:31authored byRyan Cook, Steve Hooton, Urmi Trivedi, Liz King, Christine E. R. Dodd, Jon L. Hobman, Dov J. Stekel, Michael A. Jones, Andrew D. Millard
Additional file 1: Supplementary Table 1. ViromeQC enrichment scores of Illumina viromes. Supplementary Table 2. Genes found to be under positive selection and their predicted function. Supplementary Table 3. Predicted functions of putative phage-encoded AMGs. Supplementary Table 4. Predicted host taxa for vOTUs. Supplementary Table 5. Relative abundance of vOTUs in each sample, alongside vConTACT2 cluster and predicted lifestyle. Supplementary Table 6. Mapping statistics for active prophage vOTUs that were used to infer the ends of prophage sequences. Supplementary Table 7. Mapping statistics for active prophage vOTUs that were used to infer the ends of prophage sequences for which at least one end could be predicted.