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Additional file 2: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species

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posted on 2018-05-03, 05:00 authored by Loris Pratx, Corinne Rancurel, Martine Da Rocha, Etienne Danchin, Philippe Castagnone-Sereno, Pierre Abad, Laetitia Perfus-Barbeoch
Table S2. Protein domains (Pfam) specifically associated with epigenetic factors. For each of the 6 model species, number of proteins belonging to DNMT, histones, histone modifying enzymes (Histone Acetyltransferases, HAT; Histone deacetylases, HDAC; Histone methyltransferases, HMT; Histone demethylases, HDMT; Histone kinases, HK; Histone phosphatases, HP; Histone ubiquitinyl-transferases, HUT; Histone deubiquitinases, HDU), and Argonautes are indicated, as well as the specific protein domains (Pfam) that constitute the “Pfam epigenetic factor list”. (XLSX 13 kb)

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