Additional file 1 of Multiplex methods provide effective integration of multi-omic data in genome-scale models

The improved model of Escherichia coli with underground metabolism. The model is provided as a MATLAB file compatible with the COBRA toolbox. It includes the reactions in the latest iJO1366 reconstruction, as well as underground metabolism and new gene-protein-reaction associations. The resulting model contains 1380 genes, 3027 reactions (including exchange reactions), and 2151 metabolites. (MAT 214 kb)