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Additional file 1 of Multiplex methods provide effective integration of multi-omic data in genome-scale models

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posted on 24.10.2019, 12:53 by Claudio Angione, Max Conway, Pietro Liรณ
The improved model of Escherichia coli with underground metabolism. The model is provided as a MATLAB file compatible with the COBRA toolbox. It includes the reactions in the latest iJO1366 reconstruction, as well as underground metabolism and new gene-protein-reaction associations. The resulting model contains 1380 genes, 3027 reactions (including exchange reactions), and 2151 metabolites. (MAT 214 kb)