13099_2020_371_MOESM1_ESM.xlsx (97.94 kB)
Additional file 1 of Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter
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posted on 2020-07-08, 04:25 authored by Rituparna De, Asish Kumar Mukhopadhyay, Shanta DuttaAdditional file 1. Hierarchical classification of taxonomic entities found from metagenomic sequencing in the study.
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Department of Health Research, India
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resistomeVibrio cholerae infectionIllumina MiSeq platformsamples tetracycline resistanceMAGgut microbiota signaturegut microbiomeGenome Taxonomy DatabaseAMRcoreWGSantimicrobial resistance transmissiondiarrhealmatter Abstract Background Metageno...Results 16 S rRNA amplicon sequencing20 samples491 resistance determinantsIllumina MiSeq systemantimicrobial resistance genesARGmetaSPAdes v 3.9.1OTU
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