13073_2021_847_MOESM1_ESM.xlsx (537.33 kB)

Additional file 1 of Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients

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posted on 23.02.2021, 05:15 by Yanqun Wang, Daxi Wang, Lu Zhang, Wanying Sun, Zhaoyong Zhang, Weijun Chen, Airu Zhu, Yongbo Huang, Fei Xiao, Jinxiu Yao, Mian Gan, Fang Li, Ling Luo, Xiaofang Huang, Yanjun Zhang, Sook-san Wong, Xinyi Cheng, Jingkai Ji, Zhihua Ou, Minfeng Xiao, Min Li, Jiandong Li, Peidi Ren, Ziqing Deng, Huanzi Zhong, Xun Xu, Tie Song, Chris Ka Pun Mok, Malik Peiris, Nanshan Zhong, Jingxian Zhao, Yimin Li, Junhua Li, Jincun Zhao
Additional file 1: Table S1. Summary of clinical samples and patients with COVID-19. Table S2. List of public genomes used for analysis. Table S3. Allele frequency of iSNVs detected from metatranscriptomic and/or hybrid capture data. Table S4. Genomic information of 32 SARS-CoV-2 samples. Table S5. List of intra-host single nucleotide variants within 32 SARS-CoV-2 samples. Table S6. Genetic diversity of 32 SARS-CoV-2 samples. Table S7. Genetic distance between paired samples. Table S8. Frequency of proximal iSNVs using paired-end mapped reads.

Funding

The National Key Research and Development Program of China the emergency grants for prevention and control of SARS-CoV-2 of Ministry of Science and Technology the emergency grants for prevention and control of SARS-CoV-2 of Guangdong province the Guangdong Province Basic and Applied Basic Research Fund Guangdong Science and Technology Foundation Guangdong Provincial Key Laboratory of Genome Read and Write Guangzhou Medical University High-level University Innovation Team Training Program National Natural Science Foundation of China State Key Laboratory of Respiratory Disease

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