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Additional file 11 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation

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posted on 2020-08-07, 03:48 authored by Adam Kosti, Patricia Rosa de Araujo, Wei-Qing Li, Gabriela D. A. Guardia, Jennifer Chiou, Caihong Yi, Debashish Ray, Fabiana Meliso, Yi-Ming Li, Talia Delambre, Mei Qiao, Suzanne S. Burns, Franziska K. Lorbeer, Fanny Georgi, Markus Flosbach, Sarah Klinnert, Anne Jenseit, Xiufen Lei, Carolina Romero Sandoval, Kevin Ha, Hong Zheng, Renu Pandey, Aleksandra Gruslova, Yogesh K. Gupta, Andrew Brenner, Erzsebet Kokovay, Timothy R. Hughes, Quaid D. Morris, Pedro A. F. Galante, Stefano Tiziani, Luiz O. F. Penalva
Additional file 11: Table S10. Gene set enrichment analysis (GSEA) of genes upregulated upon SERBP1 knockdown. Sheet 1, EZH2 and SUZ12 matches in ChEA 2016 datasets; sheet 2, EZH2 and SUZ12 matches in ENCODE 2015 datasets; sheet 3, genes with SUZ12 binding sites compared to upregulated set in SERBP1 knockdown; sheet 4, all genes with EZH2 binding sites compared to upregulated set in SERBP1 knockdown; sheet 5, H3K27me3 profile in embryonic stem cells; sheet 6, all genes with H3K27me3 sites compared to upregulated set in SERBP1 knockdown sheet 7; overlap all results: EZH2, SUZ12 and H3K27me3.

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