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12864_2019_5734_MOESM10_ESM.xlsx (60.62 kB)

Additional file 10: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

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posted on 2019-05-27, 05:00 authored by Elizabeth Cooper, Zachary Brenton, Barry Flinn, Jerry Jenkins, Shengqiang Shu, Dave Flowers, Feng Luo, Yunsheng Wang, Penny Xia, Kerrie Barry, Chris Daum, Anna Lipzen, Yuko Yoshinaga, Jeremy Schmutz, Christopher Saski, Wilfred Vermerris, Stephen Kresovich
Table S8. Predicted conserved domain mutations in protein sequences from the most differentially expressed genes. Genes are restricted to those with the alternate allele in the RIL. Only the top 50 DEGs in each tissue were considered. Only genes with at least one AA mutation in a conserved region are shown. Protein sequences from BTx and Rio were aligned with MUSCLE, using the msa R package from Bioconductor. CDD regions were predicted using the BTx sequences in NCBI’s batch web CD-Search tool ( https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi ). Positions refer to the residue position within BTx. (XLSX 60 kb)


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