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Supplementary Figure 15. wIBS and IBD (Affymetrix)
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posted on 2017-12-22, 13:27 authored by Anuradha Jagadeesan, Ellen D. Gunnarsdóttir, S. Sunna Ebenesersdóttir, Valdis B. Guðmundsdóttir, Elisabet Linda Thordardottir, Margrét S. Einarsdóttir, Hákon Jónsson, Jean-Michel Dugoujon, Cesar Fortes-Lima, Florence Migot-Nabias, Achille Massougbodji, Gil Bellis, Luisa Pereira, Gísli Másson, Augustine Kong, Kári Stefánsson, Agnar HelgasonPlots showing the mean and 95% CIs for (a) wIBS and (b) IBD values between HJ’s reconstructed maternal genome and African reference populations with more than 10 genotyped individuals. For estimating IBD proportions, we used the following thresholds to identify IBD fragments with HJ: i) a minimum length of 1cM, ii) a minimum number of 40 loci with matching alleles, iii) no mismatches and iv) a maximum of 5 loci with missing genotypes.
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Human GeneticsHuman ancestrygenetic variation datasetGeneaologyAfrican microarray SNP datasetsingle nucleotide polymorphismgenetic variantsIcelandic populationAfrican ancestrydense genetic dataadmixed populationsancestry fragmentSNPwhole genome sequenceWGSgenome reconstructionIcelandic ancestrychromosome fragmentsphased source population genotype data
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