MOESM4 of Genotyping by low-coverage whole-genome sequencing in intercross pedigrees from outbred founders: a cost-efficient approach

Additional file 4: Figure S4. Illustration of relationship between sequencing coverage, SNP density and imputation accuracy. (a/b) Histograms of the sequencing coverage/SNP densities for the 803 genotyped F2 individuals; (c/d) Scatter plots of individual coverage/SNP density vs imputation accuracy measured as proportion of sites that has same genotype with the averaged genotype probabilities estimated by Wahlberg et al. [21] using genotypes of 434 SNPs and microsatellite markers with the Haley and Knott algorithm [32].