MOESM3 of SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

Additional file 3 Violin plots demonstrating performance in terms of F1-score, PPV and SSV for taxonomic ranks between Phylum and Species level on n=100 simulated datasets. (A) demonstrates performance of kraken when ran on raw reads with no read threshold. (B) Performance following the application of a read threshold (500 minimum) for each classification.