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MOESM3 of Prevalence, antibiotic susceptibility and virulence factors of Enterococcus species in racing pigeons (Columba livia f. domestica)

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posted on 2020-01-08, 04:57 authored by Beata Dolka, Michał Czopowicz, Dorota Chrobak-Chmiel, Aleksandra Ledwoń, Piotr Szeleszczuk
Additional file 3. Phylogenetic tree built by the Neighbor-Joining method using sodA gene sequences and showing phylogenetic relationships of commensal Enterococcus isolates (n = 145) from racing pigens. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the Maximum Composite Likelihood method and are in the units of the number of base substitutions per site.

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