13068_2017_700_MOESM3_ESM.xlsx (13.63 MB)
MOESM3 of Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments
dataset
posted on 2017-02-07, 05:00 authored by Paul Daly, Jolanda Munster, Martin Blythe, Roger Ibbett, Matt Kokolski, Sanyasi Gaddipati, Erika Lindquist, Vasanth Singan, Kerrie Barry, Anna Lipzen, Chew Ngan, Christopher Petzold, Leanne Chan, Steven Pullan, Stéphane Delmas, Paul Waldron, Igor Grigoriev, Gregory Tucker, Blake Simmons, David ArcherAdditional file 3: Table S2. CAZy, transcription factor and sugar transporter content of MFuzz clusters from the KMS time-course. File with lists of genes from each cluster from the KMS time-course of all genes from the categories of CAZy, Pfam for sugar transporters and Pfam for Zn2Cys6 transcription factors that met selection criteria. Only genes strongly associated with a cluster’s predominant expression profile (membership value > 0.5 as well as an FPKM > 10 at the cluster’s expression peak) were selected which led to the capture of between a half and a third of each category.