40168_2019_753_MOESM1_ESM.pdf (8.56 MB)
MOESM1 of The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
journal contribution
posted on 2019-10-23, 08:29 authored by Josef Wagner, Ewan Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark Holmes, Julian Parkhill, Sharon Peacock, David Jayne, Andreas KronbichlerAdditional file 1: Figure S1. 31 cultured Staphylococcus isolates were sequenced and their assembled genomes were used for phylogenetic tree construction. a. Bacterial 16S marker gene sequenced species were matched with cultured S. aureus isolates in their phylogenetic tree. The top 22 species with a minimum abundance of 0.1% were used for the stack bar chart presentation. The top 22 species represented 98.91% of all reads. Please note: a bacterial 16S profile was not available from all samples from which an isolate was sequenced. b. Shotgun sequenced Staphylococcus species were matched with cultured S. aureus isolates in their phylogenetic tree. The top 28 taxa with a minimum abundance of 0.1% were used for the stack bar chart presentation. The top 28 taxa represented 97.25% of all reads. Please note: A Staphylococcus profile was not available from all samples from which an isolate was sequenced. (PDF 8765 kb)
