MOESM1 of Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apples seedlings grown in soils affected by replant disease

Additional file 1: Table S1. Total number of reads obtained for the metagenome libraries. Table S2. Relative abundances of the reads assigned to different taxa. Figure S1. Nonpareil analysis to estimate the average cover of the metagenomes. Non-negative matrix factorization analysis of functional annotation (KEGG levels 5) of reads assigned to category xenobiotic metabolism Table S3. Results from DESeq2 analysis of rhizosphere samples based on taxonomic annotation of the data. Table shows pairwise comparisons between the treatments using control as base. Significant differences after Bonferoni correction (padj, * = < 0.05, ** = < 0.001) are highlighted in bold. Table S4. Functional categories annotation of reads. Table S5. Results from DESeq2 analysis of rhizosphere samples based on functional annotation of the overall data. Table shows pairwise comparisons between the treatments using control as base (only reads with p < 0.05) are shown. Figure S2. Non-negative matrix factorization analysis of functional annotation (KEGG levels 5) of reads assigned to the category metabolism of terpenoids and polyketides. Figure S3. a, b and c: Pathview showing the results of DESeq2 analysis of the category environmental information processing. Red and green represent reads detected in higher or lower abundance in ARD compared with CO, respectively.