MOESM1 of Impact of a single round of mass drug administration with azithromycin on active trachoma and ocular Chlamydia trachomatis prevalence and circulating strains in The Gambia and Senegal
2019-10-23T08:23:52Z (GMT) by
Additional file 1: Figure S1. Maximum likelihood reconstruction of whole genome and MLST phylogeny of ocular C. trachomatis sequences from the Bijagos Islands, Guinea-Bissau. MLST sequences were concatenated to create a complete MLST sequence per individual. Multiple MLST and genome alignments were generated using progressiveMauve. Phylogenies were computed using RaxML  and visualised in R. MLST and WGS phylogenies were compared using R package dendextend . Isolates which were separated by < 90% of bootstrap replicates, using MLST and WGS respectively, are highlighted in the same colour. The scale-bar indicates evolutionary distance.