12864_2015_2111_MOESM9_ESM.xlsx (26.25 kB)
Additional file 9: Table S5. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome
dataset
posted on 2015-11-18, 05:00 authored by Christelle Robert, Ronan Kapetanovic, Dario Beraldi, Mick Watson, Alan Archibald, David HumeAssembled transcripts mapping statistics to the NCBI nucleotide database based on the originally unmapped (to Sscrofa10.2) RNA-Seq fragments. RNA-Seq unmapped fragments from four macrophage libraries were pooled, assembled as transcripts using SOAPdenovo-Trans-31kmer and aligned to the NCBI nucleotide database (NT). Statistics show the number of transcripts assembled, mapped to NT, and expressed at FPKM>0 or FPKM>10 with pig or human annotation present in at least one hit of the top five hits to NT. (XLSX 26 kb)