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12864_2015_2111_MOESM9_ESM.xlsx (26.25 kB)

Additional file 9: Table S5. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

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posted on 2015-11-18, 05:00 authored by Christelle Robert, Ronan Kapetanovic, Dario Beraldi, Mick Watson, Alan Archibald, David Hume
Assembled transcripts mapping statistics to the NCBI nucleotide database based on the originally unmapped (to Sscrofa10.2) RNA-Seq fragments. RNA-Seq unmapped fragments from four macrophage libraries were pooled, assembled as transcripts using SOAPdenovo-Trans-31kmer and aligned to the NCBI nucleotide database (NT). Statistics show the number of transcripts assembled, mapped to NT, and expressed at FPKM>0 or FPKM>10 with pig or human annotation present in at least one hit of the top five hits to NT. (XLSX 26 kb)

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Biotechnology and Biological Sciences Research Council

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