Additional file 8 of Finding and extending ancient simple sequence repeat-derived regions in the human genome

Additional file 8: Table S3. SSR-clouds recovery of Tandem Repeats Finder (TRF) loci. SSR-clouds loci with a merge distance of 30 bp were divided into 3 nested sets based on the most stringent oligo used to annotate each locus and compared to TRF loci. Comparisons were also made for SSR-clouds loci with FDR ≤ 5%. Cells in the table report the number of SSR-clouds loci that overlap TRF loci and the number of bp within overlapping loci. We also report the number of novel SSR-clouds loci and bp. Recovery percentages are reported relative to the total number of TRF loci in each comparison category (Poly-A: 669,020; (AC)n: 148,607; All Motifs: 2,212,424) and total length in bp of the TRF loci (Poly-A: 18,468,468; (AC)n: 7,403,867; All Motifs: 88,485,889).