Additional file 7: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

Table S1. Eighteen of 1591 Nipponbare-acquired genes. Table S2. Thirteen Nipponbare-acquired genes involving the photosynthesis pathway. Table S3. Eleven Nipponbare-acquired genes involving the oxidative phosphorylation pathway. Table S4. Eighteen DXWR-lost transcripts during domestication. The last section recorded all the parameters used in bwa, SVDetect and SVFilter. (DOC 126 kb)