12859_2018_2139_MOESM6_ESM.pdf (104.58 kB)
Additional file 6: of VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
journal contribution
posted on 2018-04-12, 05:00 authored by MacIntosh Cornwell, Mahesh Vangala, Len Taing, Zachary Herbert, Johannes KĂśster, Bo Li, Hanfei Sun, Taiwen Li, Jian Zhang, Xintao Qiu, Matthew Pun, Rinath Jeselsohn, Myles Brown, X. Liu, Henry LongFigure S4. (a) Code snippet from the config.yaml file demonstrating the addition of a boolean flag indicating whether or not to run the genome wide SNP scan. (b) Code snippet from the snp.snakefile demonstrating the addition of rules built off of existing output (aligned STAR BAM files) and yielding additional output (genome-wide SNP scans). (PDF 104Â kb)
