13059_2015_767_MOESM6_ESM.pdf (112.53 kB)
Additional file 6: Figure S6. of HiCPlotter integrates genomic data with interaction matrices
journal contribution
posted on 2015-09-21, 05:00 authored by Kadir Akdemir, Lynda ChinExample usage of tiles for presenting tissue-specific enhancer locations with HiCPlotter. a Interaction matrix of mouse embryonic stem cells displayed as a heatmap. b Histograms represent 4C genomic assay signals: two tracks are displayed for Hoxa13 interactions in mouse E12.5 digits (Digits) and in mouse E15.5 genitals (GT). c Tiles mark genital-specific (red), common (blue) and digit-specific (green) enhancer locations. d Custom domain visualization as triangles. TADs reported in mouse embryonic stem cells are displayed. (PDF 112 kb)