Additional file 6: Figure S6. of HiCPlotter integrates genomic data with interaction matrices

2015-09-21T05:00:00Z (GMT) by Kadir Akdemir Lynda Chin
Example usage of tiles for presenting tissue-specific enhancer locations with HiCPlotter. a Interaction matrix of mouse embryonic stem cells displayed as a heatmap. b Histograms represent 4C genomic assay signals: two tracks are displayed for Hoxa13 interactions in mouse E12.5 digits (Digits) and in mouse E15.5 genitals (GT). c Tiles mark genital-specific (red), common (blue) and digit-specific (green) enhancer locations. d Custom domain visualization as triangles. TADs reported in mouse embryonic stem cells are displayed. (PDF 112 kb)