Additional file 5 of The Local Edge Machine: inference of dynamic models of gene regulation

Table: Comparison of LEM to existing algorithms on both in silico benchmark datasets and in vivo datasets. As described in Additional file 1: Section 5, LEM was compared to Inferelator, Granger Causality, Hill-DBN, and Jump3 using both AUC-ROC scores and AUPR scores and to TD-ARACNE and Banjo using MCC. See Additional file 1: Section 9 for a description of the in silico networks and Additional file 1: Section 11 for a description of the yeast cell-cycle networks. No prior information was used in these comparisons. Replicates 1 and 2 indicate the biological data input to LEM for predictions on yeast cell-cycle networks 1–5. (PDF 44 kb)