12863_2017_573_MOESM4_ESM.pdf (518.6 kB)
Additional file 4: of Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle
journal contribution
posted on 2017-12-06, 05:00 authored by Taichi Arishima, Shinji Sasaki, Tomohiro Isobe, Yoshihisa Ikebata, Shinichi Shimbara, Shogo Ikeda, Keisuke Kawashima, Yutaka Suzuki, Manabu Watanabe, Sumio Sugano, Kazunori Mizoshita, Yoshikazu SugimotoTranscriptional binding sites of neighboring g.92,377,635A > G in the upstream region of FOXP3. (a) Transcriptional binding site analysis of neighboring g.92,377,635A > G was analyzed by JASPAR. Position Frequency Matrix (PFM) was converted to Position Specific Scoring Matrices (PSSM). PSSM scoring scales are represented by superscripted letters as follows: a score; sum of values from indicated cells of the matrix, b relative scores; normalization of the scores to the range of 0–1. (b) SeqLogo; a graphical representation of frequency matrix. Y-axis is information content, which reflects the strength of the pattern in each column of the matrix. A magenta arrow indicates g.92,377,635A > G. (PDF 518 kb)