Additional file 3: of Screening populations for copy number variation using genotyping-by-sequencing: a proof of concept using soybean fast neutron mutants

Copy number variants found in the 79 mutants sequenced by GBS using the two combined libraries. ID: the identifier of the mutant; CNV_type: the type of CNV (homdel = homozygous deletion, hetdel = hemizygous deletion, dup = duplication); chr: the chromosome on which the CNV is located; start: the starting position of the CNV; end: the end position of the CNV; kbp: the estimated size of the CNV in kbp; n_bins: the number of 1-kb bins supporting this CNV; mean_log2: the mean log2 ratio of the bins across this CNV; validated_by_CGH: whether or not this CNV was validated by the aCGH dataset; validated_by_PCR: whether or not this CNV was validated by the PCR/ddPCR assays. (CSV 11 kb)