Additional file 3 of Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons

Supplemental Tables. Table S1. A detailed overview of the sequencing data used in this study; Table S2. A detailed overview of the antibiotic resistance datasets used in this study; Table S3. An analysis of overfitting for the Set Covering Machine and support vector machines with linear and polynomial kernels; Table S4. Average and standard deviation of the sensitivities measured on the testing set for 10 random partitions of each dataset; Table S5. Average and standard deviation of the specificities measured on the testing set for 10 random partitions of each dataset; Table S6. Average and standard deviation of the error rates measured on the testing set for 10 random partitions of each dataset. (PDF 457 kb)