Additional file 3: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

Figure S3. Bioinformatics strategy for detection of retention and AS of minor introns. (A) Schematic describing the pipeline to detect minor intron retention, including filtering criteria. (B) Schematic describing the pipeline to detect novel AS events across minor introns, including filtering criteria. Adopted from Madan et al., 2015 [22]. See also Methods. MSI = mis-splicing index; SS = splice site; M = million. (TIF 561 kb)